Published modules

Analysis modules you can install into an existing PoolSeqFlow, each published on its own timetable rather than with a release.

PoolSeqFlow analysis modules available          # the same list, from your installation
PoolSeqFlow analysis modules install <name>     # the newest your release can run

Module	Version	Needs	What it does
association	20260910.004	PoolSeqFlow 3.0.0 · frame 20260910.001	each allele's frequency regressed on a phenotype measured per pool, with a permutation p
basicstats	20260910.004	PoolSeqFlow 3.0.0 · frame 20260910.001	site counts, depth, effective pool size and gene diversity, per pool
mds	20260910.003	PoolSeqFlow 3.0.0 · frame 20260910.001	the pools placed by Nei's minimum distance, on a classical MDS (principal coordinates analysis)

Each row names the oldest release and analysis frame it runs on. install takes the newest version your release can run rather than the newest that exists, so an installation that is behind gets a version that works instead of one that fails when it is first used. Older versions of each module stay published and stay installable by name; this table shows the newest of each.

Libraries are published here too, and are not installed by name. A module declares the ones it needs and they arrive with it, so they are listed for reference rather than to be asked for: allele_frequencies, chunk_ranges, n_eff, nei_distance, site_diversity.

The catalogue itself is index.tsv, and it is what the wrapper reads. POOLSEQFLOW_MODULE_INDEX points an installation at a different one — a mirror inside an institution, or a machine with no route to the internet.